Witrynaimod.protocols.protocol_ctfCorrecion module¶ class imod.protocols.protocol_ctfCorrecion.ProtImodCtfCorrection (**kwargs) [source] ¶. Bases: pwem.protocols.protocol ... WitrynaDirectives for Batch Processing and Template Files. Must be final extension; required in the -directive entry to Etomo. Overrides value from scanHeader; applies to B axis unless brotation used. First part of bidirectional tilt series is in second part of file for A or only axis. First part of bidirectional tilt series is in second part of file ...
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WitrynaStripe-based CTF correction (with ctfphaseflip from Imod) Creation of tomograms with Dynamo; These preprocessing operations that go from the tilt series to the tomograms can be used for any sample. Tomogram management. This part is specific to the particular geometry of the proteins of interest. Cataloguing the tomograms (archiving) WitrynaIMOD - Boulder Laboratory for 3-D Electron Microscopy of Cells - IMOD/ctfphaseflip.cpp at master · LabShare-Archive/IMOD small arms inspection building saib
Efficient 3D-CTF correction for cryo-electron tomography using …
Witryna1 lip 2012 · Local approaches, however, are currently the standard in the field. For example the program CTFPHASEFLIP [6] as incorporated in the widely used software package IMOD [16] ... Projection after (local) tilted phase flipping using CTFPHASEFLIP, which is part of IMOD. (D) Difference between (B) and (C). The tilt-axis is horizontal. … Witrynapatch2imod: Make an IMOD model of displacement vectors from a patch displacement file. point2model: Convert point listing to IMOD model file. ... ctfphaseflip: Corrects tilt … Witryna4 lut 2024 · The CTF was estimated using GCTF 61 and then the IMOD ctfphaseflip implementation was used for phase correction 62. Tomograms were manually segmented using AMIRA (Thermo Fisher Scientific) or ... small arms instructor